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Faculty

  • Ryu, Seongho, Ph.D.

    Professor

    Cancer, Metastasis, Cancer stem cell, miRNA, Epigenetics, Bioinformatics, Genomics

    Room 309, SIMS

    +82-41-413-5020

    ryu@sch.ac.kr

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We sought to find novel biomarkers for precision diagnosis and focused on serum exosomes, which is useful for liquid biopsy.

 

The concept of precision medicine is "an emerging approach for diagnosis, treatment and prevention of various diseases with individual variability in genes, environment, and lifestyle for each person." This approach will allow to predict, treat and prevent a particular disease more accurately. It is in contrast to a one-size-fits-all approach, in which drug development strategy for the average person without consideration between individual variations.

 

Cells secrete various type of extracellular vesicle (EV). EVs can be broadly divided into two categories, ectosomes and exosomes. Ectosomes are vesicles that budding out the surface of the plasma membrane. Ectosomes include microvesicles, microparticles, and large vesicles in the size range of ~50 nm to 1 m in diameter. Exosomes are EVs with a size range of 50 to 150 nm (average ~100 nm) in diameter with an endosomal origin. EVs, including exosomes, can contain many constituents of a cell, including DNA, RNA, lipids, metabolites, and cytosolic and cell-surface proteins. The physiological purpose of generating exosomes remains largely unknown but most people have been believed that exosome cargo can remove excess and/or unnecessary constituents from cells to maintain cellular homeostasis. Recent studies reviewed here also indicate a functional, targeted, mechanism-driven accumulation of specific cellular components in exosomes, suggesting that they have a role in regulating intercellular communication.

 

In our laboratory, we investigate that the usage of serum exosomes to diagnosis various diseases including cancers, diabetic complications and Alzheimer.

 

 

We sought to understand how epithelial clusters become invasive during metastasis. We focused on the non-EMT dissemination, which is crucial for dissemination of epithelial cells without EMT.

 

Most human cancers arise in epithelial tissues, which progress to metastasis when epithelial cells manage to invade their surroundings and become migratory. The epithelial-mesenchymal transition (EMT) is a process by which epithelial cells lose their cell polarity and cell-cell adhesion, and gain migratory and invasive properties to become mesenchymal stem cells; these are multipotent stromal cells that can differentiate into a variety of cell types. EMT has also been shown to occur in wound healing, in organ fibrosis and in the initiation of metastasis in cancer progression. Initiation of metastasis requires invasion, which is enabled by EMT. Carcinoma cells in a primary tumor lose cell-cell adhesion mediated by E-cadherin repression and break through the basement membrane with increased invasive properties, and enter the bloodstream through intravasation. Later, when these circulating tumor cells (CTCs) exit the bloodstream to form micro-metastases, they undergo MET for clonal outgrowth at these metastatic sites. Thus, EMT and MET form the initiation and completion of the invasion-metastasis cascade.

 

We investigate that the tumor may undergo metastasis without EMT. Epithelial cells can disseminate primary site without EMT. Later, epithelial clusters undergo EMT at the metastatic sites. These findings provides a new concept for metastasis and a clue for developing anti-metastatic drug.

Principal Investigator


Seongho Ryu

Research Assistant, Medical College of Virginia, USA

Teaching Assistant, New York University (NYU), USA

Ph.D. in Bioinformatics, New York University (NYU), USA

Postdoctoral Associate, Weill Cornell Medical College, USA

Assistant Professor, Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea

 Professor, Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea




Postdoctoral Fellow


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Jea A Han

Postdoctoral Fellow

- (2020), Ph.D. Integrated Biomedical Science, Soonchunhyang Institute of Medi-Bio Science, Soonchunhyang University, South Korea

Undergraduate University: Yanbian University of Science and Technology (China)

Research Topic : Clinical Impact of Circulating Exosomal MicroRNA as a Novel Biomarker of Various Diseases


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Jin-Hyeop Jeong

Postdoctoral Fellow

- (2020), Ph.D. Department of Biological Sciences, Seoul National University

- (2015), BS. Department of Biological Sciences, Seoul National University

Research Topic: Genomics, Molecular Evolution, Invertebrates




Graduate Students


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Trịnh Vạn Ngữ

PhD Student

- (2016-2020), Ph.D. Integrated Biomedical Science, Soonchunhyang Institute of Medi-Bio Science, Soonchunhyang University

- (2014-2016), MSc in Biotechnology, University of Science, Viet Nam National University, Ho Chi Minh City, Viet Nam

- (2009-2013), BSc in Biotechnology, University of Science, Viet Nam National University, Ho Chi Minh City, Viet Nam

Research Topic: Cancer metastasis, Epithelial-Mesenchymal Transition, Tumor microenvironment


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Eunbit Kim

PhD Student

- (2016) BS. Biotechnology, Seoul Women's University

Research Topic: The applications of exosomics in medicine and health

 

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Le Nguy Hoang Linh

MS Student

- (2016- present), MS. in Biomedical Science, SoonChunHyang Institute of Medi-Bio Science, Soonchunhyang University, South Korea

- (2011-2015), Bachelor of Biotechnology, University of Science, Vietnam National University, Ho Chi Minh City

Research Topic: Molecular function of APOL1 in clear cell renal cell carcinoma


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Arnawati Jo

MS/Ph.D Student (combined), 2019

- School of undergraduate : Atma Jaya Catholic University of Indonesia

Research Topic : Exosomal miRNA: Biogenesis, Biological function, and Clinical Potential




Researchers


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Juhyeon Kim

Researcher

- (2018) Bachelor of Engineering, Computer Software Engineering, Kongju National University

Research Topic: Bioinformatics, miRNA analysis software development


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Heeji Kim

Researcher

- (2020) MS. Dankook university

Research Topic: Bioinformatics, Small RNA Detector: a small RNA-seq analysis pipeline for identification of novel small RNAs


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Yin Gi Jang

Researcher

- M.S in Veterinary medicine, Chungbuk National University
Research Topic: Cancer, Exosome, miRNA


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Bae Seon Joo

Researcher

- (2013) MS in Biochemistry, Chungnam national university ,
Research Topic: Cancer, Exosome, miRNA


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Sumin Seo

Researcher

- (2020) MS:Integrated Biomedical Science, Soonchunhyang Institute of Medi-Bio Science, Soonchunhyang University

- (2018) BS: soonchunhyang University

-Research topic: Cancer, Metastasis, Cancer stem cell, miRNA, Epigenetics, Bioinformatics, Genomics



Javaria Munir, Jeong Kyo Yoon, Seongho Ryu*, Therapeutic miRNA-Enriched Extracellular Vesicles: Current Approaches and Future Prospects. Cells. 2020 Oct 11;9(10):2271. (*Corresponding author)

 

Hyoshik Kim, Yun-Ui Bae, Haekyung Lee, Hyoungnae Kim, Jin Seok Jeon, Hyunjin Noh, Dong Cheol Han, Dong Won Byun, Sang Hyun Kim, Hyeong Kyu Park, Seongho Ryu*, Soon Hyo Kwon, Effect of diabetes on exosomal miRNA profile in patients with obesity. BMJ Open Diabetes Res Care. 2020 Sep;8(1):e001403. (*Corresponding author)


Jin Seok Jeon, Eunbit Kim, Yun-Ui Bae, Won Mi Yang, Haekyung Lee, Hyoungnae Kim, Hyunjin Noh, Dong Cheol Han, Seongho Ryu*, Soon Hyo Kwon*. microRNA in Extracellular Vesicles Released by Damaged Podocytes Promote Apoptosis of Renal Tubular Epithelial Cells. Cells. 2020 Jun 5;9(6):E1409. (*Corresponding author).

 

Young Sok Ji, Seong Kyu Park, Seongho Ryu*. Whole Leukemia Cell Vaccines: Past Progress and Future Directions. Vaccine. 2020 May 8;38(22):3811-3820. (*Corresponding author).

 

Javaria Munir, Trinh Van Ngu, Penchatr Diskul Na Ayudthaya, Seongho Ryu*. Downregulation of glypican-4 Facilitates Breast Cancer Progression by Inducing Cell Migration and Proliferation. Biochemical and Biophysical Research Communication. 2020 May 21;526(1):91-97. (*Corresponding author).

 

Shira Yomtoubian, Sharrell B Lee, Akanksha Verma, Franco Izzo, Geoffrey Markowitz, Hyejin Choi, Leandro Cerchietti, Linda Vahdat, Kristy A Brown, Eleni Andreopoulou, Olivier Elemento, Jenny Chang, Giorgio Inghirami, Dingcheng Gao, Seongho Ryu*, Vivek Mittal*. Inhibition of EZH2 Catalytic Activity Selectively Targets a Metastatic Subpopulation in Triple-Negative Breast Cancer. Cell Reports. 2020 Jan 21;30(3):755-770.e6. (*Corresponding author)

 

Javaria Munir, Mihye Lee, Seongho Ryu*. Exosomes in Food: Health Benefits and Clinical Relevance in Diseases. Advances in Nutrients. 2020 May 1;11(3):687-696. (*Corresponding author).

 

Cheol-Ho Hyun, Heesoo Kim, Seongho Ryu*, Won Kim*. Preliminary Study on Microeukaryotic Community Analysis Using NGS Technology to Determine Postmortem Submersion Interval (PMSI) in the Drowned Pig. Journal of Microbiology. 2019 Nov;57(11):1003-1011. (*Corresponding author)

 

Hyoungnae Kim, Yun-Ui Bae, Jin Seok Jeon, Hyunjin Noh, Hyeong Kyu Park, Dong Won Byun, Dong Cheol Han, Seongho Ryu*, Soon Hyo Kwon*. The Circulating Exosomal microRNAs Related to Albuminuria in Patients With Diabetic Nephropathy. Journal of Translational Medicine. 2019 Jul 22;17(1):236. (*Corresponding author)

 

Yun-Ui Bae, Yongjin Kim, Haekyung Lee, Hyoungnae Kim, Jin Seok Jeon, Hyunjin Noh, Dong Cheol Han, Seongho Ryu*, Soon Hyo Kwon*. Bariatric Surgery Alters microRNA Content of Circulating Exosomes in Patients With Obesity. Obesity. 2019 Feb;27(2):264-271. (*Corresponding author)

 

Cheolwon Choi , Seulgi Yoon , Hyesu Moon, Yun-Ui Bae, Chae-Bin Kim, Penchatr Diskul-Na-Ayudthaya, Trinh Van Ngu, Javaria Munir, JaeWook Han, Se Bin Park, Jong-Seok Moon, Sujung Song, Seongho Ryu*. mirRICH, a Simple Method to Enrich the Small RNA Fraction From Over-Dried RNA Pellets. RNA Biology. 2018 15(6):763-772. (*Corresponding author).

 

Choi C, Thi Thao Tran N, Van Ngu T, Park SW, Song MS, Kim SH, Bae YU, Ayudthaya PDN, Munir J, Kim E, Baek MJ, Song S, Ryu S*, Nam KH*. Promotion of tumor progression and cancer stemness by MUC15 in thyroid cancer via the GPCR/ERK and integrin-FAK signaling pathways. Oncogenesis. 2018 12;7(11):85. (*Corresponding author)

 

Cheolwon Choi, James Han, Nguyen Thi Thao Tran, Seulgi Yoon, Goeun Kim, Sujung Song, Youngjo Kim, Seongho Ryu*. Effective Experimental Validation of miRNA Targets Using an Improved Linker Reporter Assay. Genetic Research 2017 Jan 30;99:e2.

 

Hyundoo Hwang, Changsik Shin, Juhee Park, Enoch Kang, Bongseo Choi, Jae-A Han, Yoonkyung Do, Seongho Ryu*, Yoon-Kyoung Cho*. Human breast cancer-derived soluble factors facilitate CCL19-induced chemotaxis of human dendritic cells. Scientific Reports 2016 Jul 25: 6:30207. (*Corresponding author)

 

Bongseo Choi, Hyojin Moon, Sung Joon Hong, Changsik Shin, Yoonkyung Do, Seongho Ryu* , Sebyung Kang*. Effective Delivery of Antigen-Encapsulin Nanoparticle Fusions to Dendritic Cells Leads to Antigen-Specific Cytotoxic T Cell Activation and Tumor Rejection. ACS Nano. 2016 Jul 8, 10:7339-7350. (*Corresponding author)

 

Changsik Shin, Han JA, Choi B, Cho YK, Do Y, Seongho Ryu*. Intrinsic features of the CD8- dendritic cell subset in inducing functional T follicular helper cells. Immunol Letters. 2016 Apr 2;172:21-28. (*Corresponding author).

 

Fischer KR, Durrans A, Lee S, Sheng J, Li F, Wong ST, Choi H, El Rayes T, Seongho Ryu, Troeger J, Schwabe RF, Vahdat LT, Altorki NK, Mittal V, Gao D. Epithelial-to-mesenchymal transition is not required for lung metastasis but contributes to chemoresistance. Nature. 2015 Nov 26;527(7579):472-6.

 

Changsik Shin, Jae-A Han, Hyein Koh, Bongseo Choi, Yongbin Cho, Hyeongmin Jeong, Jea-Sun Ra, Pil Soo Sung, Eui-Cheol Shin, Seongho Ryu*, Yoonkyung Do*. CD8(-) Dendritic Cells Induce Antigen-Specific T Follicular Helper Cells Generating Efficient Humoral Immune Responses. Cell Reports. (2015) Jul 30;11(12):1929-40. (*Corresponding author)

 

Seongho Ryu, Kevin McDonnell, Hyejin Choi, Dingcheng Gao, Mary Hahn, Natasha Joshi, Sun Mi Park, Raul Catena, Yoonkyung Do, Jacqueline Brazin, Linda T. Vahdat, Randi B. Silver, and Vivek Mittal. Suppression of miRNA-708 by polycomb group promotes metastases by calcium-induced cell migration. Cancer Cell (2013) 23:63-76. (*First author).